We discuss a model for directed percolation in which the flux of material along each bond is a dynamical variable. The model includes a physically significant limiting case where the total flux of material is conserved. We show that the distribution of fluxes is asymptotic to a power law at small fluxes. We give an implicit equation for the exponent, in terms of probabilities characterising site occupations. In one dimension the site occupations are exactly independent, and the model is exactly solvable. In two dimensions, the independent-occupation assumption gives a good approximation. We explore the relationship between this model and traditional models for directed percolation.
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Yang, Xingbo ; Heinemann, Matthias ; Howard, Jonathon ; Huber, Greg ; Iyer-Biswas, Srividya ; Le Treut, Guillaume ; Lynch, Michael ; Montooth, Kristi L. ; Needleman, Daniel J. ; Pigolotti, Simone ; et al ( , Proceedings of the National Academy of Sciences)
Cells are the basic units of all living matter which harness the flow of energy to drive the processes of life. While the biochemical networks involved in energy transduction are well-characterized, the energetic costs and constraints for specific cellular processes remain largely unknown. In particular, what are the energy budgets of cells? What are the constraints and limits energy flows impose on cellular processes? Do cells operate near these limits, and if so how do energetic constraints impact cellular functions? Physics has provided many tools to study nonequilibrium systems and to define physical limits, but applying these tools to cell biology remains a challenge. Physical bioenergetics, which resides at the interface of nonequilibrium physics, energy metabolism, and cell biology, seeks to understand how much energy cells are using, how they partition this energy between different cellular processes, and the associated energetic constraints. Here we review recent advances and discuss open questions and challenges in physical bioenergetics.
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Kawagoe, Kyle ; Huber, Greg ; Pradas, Marc ; Wilkinson, Michael ; Pumir, Alain ; Ben-Naim, Eli ( , Physical Review E)
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Berry, D. K. ; Caplan, M. E. ; Horowitz, C. J. ; Huber, Greg ; Schneider, A. S. ( , Physical Review C)